PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J117800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 339aa    MW: 36919.8 Da    PI: 8.0776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J117800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.8e-1857106255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Pavir.J117800.2.p  57 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 106
                        889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-2454127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.88855105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1955129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-1557110No hitNo description
PfamPF000102.5E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1361111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDVGSRSSGG AGFDDDDGLA ARREVSSTLK ELSVRVETKG GSCSGSAGTD QLPNTPRSKH  60
SATEQRRRSK INDRFQILRE ILPQNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSNPEWN  120
QENAKIVPWS NIYFRSSWKN LQNKDEINGD MASDPSQVIK NGLSPRFPFA AKPEDHNNAG  180
AFETASGAQE LAEPKGCVPF KPAETPSKIT NTVASQQPTQ LTNPLPSDDC AAPNGMLSNP  240
ELAIDEGTIS LSSQYSQGLL TTLNLALQNS GIDLSQASIS VQINLGKRAT KRSAPGSNST  300
SKNLINQASR DQEIGHQLRS GDGAREHSQA TKRHKSDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.14641e-103root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0702371e-119AK070237.1 Oryza sativa Japonica Group cDNA clone:J023047A01, full insert sequence.
GenBankAK1001831e-119AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
GenBankHQ8588651e-119HQ858865.1 Oryza sativa Japonica Group isolate UT1674 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973763.10.0PREDICTED: transcription factor BIM1-like
TrEMBLK3YHA40.0K3YHA4_SETIT; Uncharacterized protein
STRINGSi013622m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-57BES1-interacting Myc-like protein 2